PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8255_iso_6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 532aa    MW: 59114.4 Da    PI: 9.8515
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8255_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-08414462348
                                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
                      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                          +W+  E  +lv++v+++G g+W+ I r        Rt  ++k++w+++l
  cra_locus_8255_iso_6_len_2342_ver_3 414 PWSLTEVVKLVEGVARYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 462
                                          8****************************99**99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.092407466IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-13409467IPR009057Homeodomain-like
SMARTSM007171.1E-8411464IPR001005SANT/Myb domain
SuperFamilySSF466897.8E-16413470IPR009057Homeodomain-like
CDDcd116603.70E-18413463No hitNo description
PfamPF002499.9E-7414462IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MERREAKRIR KPTKRYIEET SDVGSRESNG RLVSLVELGK RIAHQEESTR SEGMNTSQSQ  60
NLEACSSSQG RSIGIDASTS GGSITKPDFS MLKGEICLDN LSIKDLQETF KATFGRETSV  120
KDKQWLKRRI AMGLTNSCDF STTTFIIEDN RVVKMFKGET SKSSAASEDL IAEAGNQTSG  180
GLTDVCDKEI NVHSDSDAKR PESSLLECNS VGEDPNVEQR VAKRVRKPTK RYIEEISEGE  240
SRESSGRMIT LVRSPESGQQ SAKSVVRPFH HSQQEGRPTV TRQDSFGGSG VQVPFVSRVR  300
RSRPRENFMT LAKLQLDDIG TSAKVVKKAF EEPARMAHDD AGNNVLKASL SPKWIGQPLI  360
AVSEEGKHHP ERIVEHENDI ELKSMNSFGY KSDDSNVVNM PAPMGGMRRK HHRPWSLTEV  420
VKLVEGVARY GAGRWSEIKR LAFASYSYRT SVDLKDKWRN LLRASLTQLP AENGMQNSRK  480
HASIPIPAPI LLRVRELAET QAQVPPNISS SKFAGHSGGT DRNSQETRPG YL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342945.11e-165PREDICTED: uncharacterized protein LOC102604816 isoform X1
RefseqXP_006342946.11e-165PREDICTED: uncharacterized protein LOC102604816 isoform X1
RefseqXP_015162223.11e-166PREDICTED: uncharacterized protein LOC102604816 isoform X2
TrEMBLA0A0K1SBL31e-172A0A0K1SBL3_REHGL; Telomere repeat-binding factor like-protein
STRINGPGSC0003DMT4000063421e-165(Solanum tuberosum)